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AFA_01090 protein (Alcaligenes faecalis) - STRING interaction network
"AFA_01090" - ABC transporter ATP-binding protein in Alcaligenes faecalis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFA_01090ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)    
Predicted Functional Partners:
JT27_03115
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (354 aa)
 
  0.996
JT27_03120
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (309 aa)
 
  0.995
JT27_03110
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (439 aa)
 
  0.987
JT27_03105
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
0.968
JT27_03130
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (651 aa)
 
          0.965
JT27_11550
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (320 aa)
 
  0.932
JT27_05115
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (326 aa)
 
  0.930
JT27_05470
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (319 aa)
 
  0.925
JT27_01820
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (345 aa)
 
  0.923
JT27_02755
Inner-membrane translocator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (312 aa)
 
  0.921
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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