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JT27_03565 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_03565" - Invasion gene expression up-regulator SirB in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_03565Invasion gene expression up-regulator SirB; Derived by automated computational analysis using gene prediction method- Protein Homology (126 aa)    
Predicted Functional Partners:
JT27_03570
Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
              0.549
JT27_02925
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (455 aa)
 
          0.465
JT27_11880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
   
          0.440
JT27_14890
Cytochrome; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
   
          0.413
JT27_03580
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
              0.410
JT27_03575
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
              0.410
JT27_03585
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (136 aa)
              0.405
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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