STRINGSTRING
JT27_04120 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_04120" - TonB-dependent receptor in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_04120TonB-dependent receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (905 aa)    
Predicted Functional Partners:
JT27_04125
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (413 aa)
              0.848
JT27_04115
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
 
  0.847
JT27_01005
Receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (1055 aa)
 
   
  0.765
JT27_04110
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (164 aa)
 
   
  0.739
JT27_04860
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (325 aa)
 
 
  0.613
JT27_07475
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
 
 
  0.611
JT27_06165
Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
 
  0.610
JT27_09560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
 
 
  0.610
JT27_12370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
 
 
  0.608
JT27_17710
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
 
  0.605
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (7%) [HD]