STRINGSTRING
JT27_04255 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_04255" - Transcriptional regulator in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
JT27_04255Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)    
Predicted Functional Partners:
JT27_04250
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (450 aa)
 
 
  0.968
JT27_16995
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
  0.721
JT27_09790
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (481 aa)
 
 
  0.695
JT27_08845
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
 
  0.690
JT27_17940
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (379 aa)
 
  0.674
JT27_17815
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (485 aa)
 
  0.655
JT27_07415
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (468 aa)
 
  0.649
JT27_05410
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
 
  0.608
JT27_14430
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1039 aa)
 
 
  0.604
JT27_01160
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)
 
  0.585
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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