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JT27_04400 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_04400" - TonB-dependent receptor in Alcaligenes faecalis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_04400TonB-dependent receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (701 aa)    
Predicted Functional Partners:
JT27_04395
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
              0.846
JT27_01005
Receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (1055 aa)
 
 
  0.723
JT27_08145
Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1257 aa)
         
  0.611
kdpB
Potassium-transporting ATPase ATP-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily (694 aa)
     
        0.591
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily (689 aa)
           
  0.559
JT27_08545
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
 
  0.540
gshA
Glutamate--cysteine ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily (527 aa)
              0.531
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (250 aa)
     
        0.512
JT27_10055
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (731 aa)
   
 
  0.509
JT27_19135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
   
 
  0.499
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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