STRINGSTRING
JT27_05590 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_05590" - Transmembrane sensor in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_05590Transmembrane sensor; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)    
Predicted Functional Partners:
JT27_17715
RNA polymerase ECF-subfamily sigma-70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
 
 
  0.773
JT27_02480
RNA polymerase ECF-subfamily sigma-70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (168 aa)
 
 
  0.771
JT27_12365
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (168 aa)
 
 
  0.753
JT27_07470
RNA polymerase ECF-subfamily sigma-70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (168 aa)
 
 
  0.742
JT27_10390
RNA polymerase ECF-subfamily sigma-70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (167 aa)
 
 
  0.734
JT27_09565
RNA polymerase ECF-subfamily sigma-70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (166 aa)
 
 
  0.731
JT27_02660
Fe2+-dicitrate sensor, membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
   
          0.683
JT27_07550
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
   
          0.669
JT27_07385
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (703 aa)
 
 
  0.623
JT27_04110
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (164 aa)
 
 
  0.616
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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