STRINGSTRING
JT27_07320 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_07320" - Translation elongation factor in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_07320Translation elongation factor; Derived by automated computational analysis using gene prediction method- Protein Homology (639 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis (472 aa)
 
   
  0.989
JT27_07345
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family (811 aa)
 
     
  0.964
fdhE
Protein FdhE homolog; Necessary for formate dehydrogenase activity (308 aa)
 
        0.941
JT27_07340
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
     
  0.925
JT27_07350
Sulfate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
 
     
  0.915
JT27_07335
Formate dehydrogenase; Cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
 
          0.891
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
     
 
  0.865
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (257 aa)
     
 
  0.844
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (344 aa)
 
   
  0.838
rpsB
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the universal ribosomal protein uS2 family (249 aa)
     
      0.834
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (28%) [HD]