STRINGSTRING
JT27_07355 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_07355" - Globin in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_07355Globin; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)    
Predicted Functional Partners:
JT27_01100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
   
   
  0.873
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (358 aa)
           
  0.667
JT27_07360
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
         
  0.662
sufC
Fe-S cluster assembly ATPase SufC; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
           
  0.563
JT27_16190
Flavodoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
         
  0.553
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family (316 aa)
           
  0.549
cysS
Cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family (483 aa)
         
  0.541
JT27_12520
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
   
  0.530
JT27_12140
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
   
  0.530
JT27_00275
NADH oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
   
   
  0.530
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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