STRINGSTRING
JT27_08290 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_08290" - Transcriptional regulator in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_08290Transcriptional regulator; Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)    
Predicted Functional Partners:
JT27_08285
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
     
 
  0.870
JT27_19600
RNA polymerase factor sigma-54; Derived by automated computational analysis using gene prediction method- Protein Homology (362 aa)
   
     
  0.789
JT27_04530
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (461 aa)
   
     
  0.785
JT27_16420
Electron transfer flavoprotein-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (548 aa)
         
  0.620
JT27_15580
Radical SAM protein; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
         
  0.597
JT27_13480
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (585 aa)
       
  0.581
JT27_07750
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
   
 
  0.546
JT27_08295
Nitric oxide reductase large subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (759 aa)
         
  0.480
JT27_01100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
 
     
  0.477
JT27_06325
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)
         
  0.446
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (8%) [HD]