STRINGSTRING
JT27_08720 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_08720" - ABC transporter substrate-binding protein in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_08720ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (367 aa)    
Predicted Functional Partners:
JT27_20155
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (202 aa)
 
     
  0.796
JT27_05185
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
 
     
  0.796
JT27_17535
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
     
  0.795
JT27_20160
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (558 aa)
 
     
  0.794
JT27_17530
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (557 aa)
 
     
  0.794
JT27_05190
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (589 aa)
 
     
  0.794
JT27_04140
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)
 
     
  0.791
JT27_09605
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
 
     
  0.747
JT27_04135
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (440 aa)
 
     
  0.736
JT27_09610
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (640 aa)
 
     
  0.720
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (10%) [HD]