STRINGSTRING
JT27_08965 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_08965" - Lipopolysaccharide core biosynthesis glycosyl transferase in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_08965Lipopolysaccharide core biosynthesis glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (371 aa)    
Predicted Functional Partners:
JT27_06565
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
   
          0.724
JT27_08970
Transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (378 aa)
 
       
0.648
JT27_08980
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
   
 
  0.628
JT27_08990
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
       
0.602
JT27_11780
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
   
          0.591
dnaE
DNA-directed DNA polymerase; Catalyzes DNA-template-directed extension of the 3’- end of a DNA strand by one nucleotide at a time; main replicative polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (1158 aa)
              0.589
JT27_11770
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (371 aa)
   
          0.584
JT27_11790
Vi polysaccharide biosynthesis protein VipB/TviC; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
 
  0.576
JT27_08975
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)
     
  0.570
JT27_11775
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
   
          0.555
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (9%) [HD]