STRINGSTRING
JT27_09395 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_09395" - C4-dicarboxylate ABC transporter permease in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_09395C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (431 aa)    
Predicted Functional Partners:
JT27_09405
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
   
  0.953
JT27_09400
TRAP C4-dicarboxylate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
 
   
  0.868
JT27_19955
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
   
  0.796
JT27_04655
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
   
  0.790
JT27_03435
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
  0.789
JT27_19960
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
 
   
  0.767
JT27_04680
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
   
  0.758
JT27_11405
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
   
  0.751
JT27_09655
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
   
  0.741
JT27_09410
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (441 aa)
   
        0.654
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (11%) [HD]