STRINGSTRING
xerD protein (Alcaligenes faecalis) - STRING interaction network
"xerD" - Tyrosine recombinase XerD in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTyrosine recombinase XerD; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)    
Predicted Functional Partners:
JT27_10460
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily (164 aa)
              0.878
JT27_14955
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method- Protein Homology (791 aa)
 
 
 
  0.707
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (905 aa)
 
   
  0.667
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (572 aa)
 
     
  0.648
xerC
Tyrosine recombinase XerC; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family. XerC subfamily (317 aa)
   
 
0.639
JT27_01460
Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (569 aa)
 
   
  0.595
JT27_10450
Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
         
  0.593
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (320 aa)
         
  0.567
groS
10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter (95 aa)
           
  0.545
JT27_13420
Methionine aminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
           
  0.545
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (7%) [HD]