STRINGSTRING
AFA_03875 protein (Alcaligenes faecalis) - STRING interaction network
"AFA_03875" - TetR family transcriptional regulator in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFA_03875TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)    
Predicted Functional Partners:
JT27_10635
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
          0.849
JT27_10630
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
          0.664
JT27_00945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (144 aa)
   
          0.525
JT27_06340
Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
          0.474
JT27_09210
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
   
          0.468
JT27_00995
O-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)
   
          0.436
JT27_01000
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.420
JT27_00765
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
   
          0.416
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (12%) [HD]