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JT27_12410 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_12410" - Peroxiredoxin in Alcaligenes faecalis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
JT27_12410Peroxiredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)    
Predicted Functional Partners:
rpmI
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
        0.687
JT27_03380
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
     
        0.672
rpmE2
50S ribosomal protein L31; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to [...] (88 aa)
     
        0.638
JT27_12415
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
              0.595
JT27_19225
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
   
 
  0.562
JT27_17310
Peroxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
 
  0.539
rpmA
50S ribosomal protein L27; Involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL27 family (86 aa)
     
        0.493
JT27_12405
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
              0.457
JT27_12400
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (366 aa)
              0.457
JT27_04435
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
     
        0.452
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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