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JT27_12525 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_12525" - Transporter in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_12525Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (406 aa)    
Predicted Functional Partners:
JT27_12530
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (1058 aa)
 
  0.981
JT27_12535
Multidrug transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (491 aa)
 
 
  0.947
JT27_13540
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (1064 aa)
 
  0.875
JT27_01110
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
 
 
  0.777
JT27_14650
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
 
 
  0.773
JT27_14240
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (477 aa)
 
 
  0.757
JT27_14335
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (494 aa)
 
 
  0.755
JT27_13535
Multidrug transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
 
 
  0.739
JT27_08250
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (491 aa)
 
 
  0.728
JT27_08240
Multidrug transporter; Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1028 aa)
 
  0.714
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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