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JT27_12975 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_12975" - DNA-binding protein in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_12975DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (106 aa)    
Predicted Functional Partners:
JT27_12980
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (63 aa)
              0.765
JT27_14085
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
   
          0.579
JT27_03880
Flagellar assembly protein FliT; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
   
          0.576
JT27_12970
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
              0.571
JT27_18820
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
   
          0.562
JT27_05750
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
 
          0.557
JT27_08040
Ferritin; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
   
          0.547
JT27_14865
Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
   
          0.525
JT27_11215
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.483
JT27_12585
Porin; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
        0.473
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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