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JT27_13205 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_13205" - Integrase in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_13205Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (374 aa)    
Predicted Functional Partners:
JT27_20235
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
   
          0.739
JT27_12585
Porin; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.737
JT27_14865
Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
   
          0.726
JT27_14800
TadE family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (145 aa)
   
          0.696
JT27_09750
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (135 aa)
   
          0.678
JT27_05145
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
   
          0.669
JT27_04520
Peptidase C45; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
   
          0.641
JT27_13200
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
         
  0.625
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (905 aa)
   
   
  0.588
JT27_12350
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
   
          0.548
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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