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JT27_14860 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_14860" - Fis family transcriptional regulator in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
JT27_14860Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (467 aa)    
Predicted Functional Partners:
JT27_14855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (671 aa)
 
     
  0.842
JT27_19600
RNA polymerase factor sigma-54; Derived by automated computational analysis using gene prediction method- Protein Homology (362 aa)
 
     
  0.796
JT27_04530
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (461 aa)
 
     
  0.793
JT27_14865
Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
 
          0.746
JT27_03655
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (693 aa)
   
   
  0.739
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (905 aa)
         
  0.567
JT27_17010
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1147 aa)
     
 
  0.440
JT27_14820
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.405
JT27_11720
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
   
 
  0.403
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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