STRINGSTRING
JT27_15625 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_15625" - Integrase in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_15625Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (372 aa)    
Predicted Functional Partners:
JT27_12925
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (542 aa)
   
        0.624
JT27_13170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (577 aa)
 
   
  0.529
AFA_11230
Transcriptional regulator HU subunit alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions (90 aa)
     
 
  0.515
JT27_13085
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
        0.482
JT27_13175
Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
   
  0.440
dusA
tRNA-dihydrouridine(20/20a) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily (320 aa)
         
  0.408
JT27_14130
Resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
 
   
  0.408
JT27_12915
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
   
          0.404
JT27_05565
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
   
        0.402
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (17%) [HD]