STRINGSTRING
JT27_16345 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_16345" - Uncharacterized protein in Alcaligenes faecalis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_16345Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)    
Predicted Functional Partners:
JT27_16350
Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)
              0.845
JT27_16340
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (196 aa)
              0.845
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (296 aa)
              0.845
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (252 aa)
              0.845
JT27_16325
Signal peptidase I; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S26 family (294 aa)
              0.845
AFA_03375
Barstar family protein 2; Derived by automated computational analysis using gene prediction method- Protein Homology (155 aa)
   
          0.731
JT27_17695
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
   
          0.726
JT27_04325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
   
          0.724
JT27_10720
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
   
          0.668
JT27_11685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
   
          0.664
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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