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JT27_16780 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_16780" - Uncharacterized protein in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_16780Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)    
Predicted Functional Partners:
JT27_13990
Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.727
JT27_17650
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
   
          0.708
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (121 aa)
   
          0.701
JT27_13370
Outer membrane protein chaperone; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the skp family (184 aa)
   
 
 
  0.663
JT27_04555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (115 aa)
   
          0.653
JT27_06555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
   
          0.640
JT27_14015
Phasin (PHA-granule associated protein); Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
   
          0.594
JT27_16575
Glycosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (586 aa)
   
          0.586
JT27_04635
DNA topoisomerase III; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method- Protein Homology (863 aa)
   
          0.577
JT27_19135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
 
 
 
  0.551
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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