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nudH protein (Alcaligenes faecalis) - STRING interaction network
"nudH" - RNA pyrophosphohydrolase in Alcaligenes faecalis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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nudHRNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (188 aa)    
Predicted Functional Partners:
JT27_19100
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
   
   
  0.849
JT27_19105
Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
         
  0.847
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2’-deoxyuridine- 5’-monophosphate (dUMP) to 2’-deoxythymidine-5’-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis (266 aa)
 
 
  0.844
JT27_07825
Peptidase S41; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S41A family (503 aa)
       
  0.791
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (307 aa)
 
 
  0.787
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves deacy [...] (578 aa)
   
   
  0.766
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
   
 
  0.594
tolQ
Protein TolQ; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
 
        0.585
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (436 aa)
 
          0.578
JT27_19130
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
 
          0.568
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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