STRINGSTRING
JT27_19130 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_19130" - Biopolymer transporter ExbD in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_19130Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)    
Predicted Functional Partners:
tolQ
Protein TolQ; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
 
 
  0.989
JT27_19120
Acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
 
   
  0.933
JT27_19135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
   
 
  0.932
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (436 aa)
 
 
  0.927
JT27_19145
Peptidoglycan-associated lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family (167 aa)
 
 
 
  0.902
JT27_17955
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
 
  0.873
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves deacy [...] (578 aa)
              0.768
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (780 aa)
   
          0.698
JT27_07500
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology (650 aa)
   
 
  0.665
JT27_01900
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
 
 
  0.639
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (11%) [HD]