STRINGSTRING
JT27_19460 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_19460" - LysR family transcriptional regulator in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_19460LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)    
Predicted Functional Partners:
JT27_02530
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
   
  0.744
JT27_08875
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
   
          0.743
JT27_19465
Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
 
          0.714
phnC
Phosphonates import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family (271 aa)
 
          0.685
JT27_11160
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
   
        0.684
JT27_19475
Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
          0.672
JT27_00465
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
   
          0.627
JT27_19480
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)
 
          0.617
JT27_03235
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
   
   
  0.610
JT27_17190
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
   
        0.608
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (16%) [HD]