STRINGSTRING
JT27_20005 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_20005" - Cupin in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_20005Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (126 aa)    
Predicted Functional Partners:
JT27_19990
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)
 
     
  0.777
JT27_20000
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
          0.775
JT27_04670
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (173 aa)
 
          0.703
JT27_19995
Acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
              0.670
JT27_02625
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
   
          0.635
JT27_02640
Desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
   
          0.629
JT27_02630
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (636 aa)
 
          0.626
JT27_15885
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
   
     
  0.621
JT27_02635
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.596
JT27_14170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (624 aa)
   
          0.576
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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