Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ibsD | mokC | b4664 | b0018 | Toxic membrane protein. | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | 0.457 |
lit | mokC | b1139 | b0018 | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | 0.457 |
mokC | ibsD | b0018 | b4664 | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | Toxic membrane protein. | 0.457 |
mokC | lit | b0018 | b1139 | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | 0.457 |
mokC | yfbP | b0018 | b2275 | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | TPR-like repeats-containing protein. | 0.543 |
yfbP | mokC | b2275 | b0018 | TPR-like repeats-containing protein. | Regulatory protein for HokC, overlaps CDS of hokC; Might be the toxic component of a type I toxin-antitoxin (TA) system (By similarity). Regulatory peptide which completely overlaps hokC and enables hokC expression; Belongs to the Hok/Gef family. | 0.543 |