STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yagMUncharacterized protein YagM; Phage or Prophage Related (284 aa)    
Predicted Functional Partners:
yagL
Uncharacterized protein YagL; DNA-binding protein
  
  
 0.936
ybcK
Uncharacterized protein YbcK; Phage or Prophage Related
      
 0.787
yiiG
annotation not available
      
 0.734
yffL
Uncharacterized protein YffL; Phage or Prophage Related
      
 0.733
yjfJ
Belongs to the PspA/IM30 family
      
 0.732
ynbB
Uncharacterized protein YnbB; Putative phosphatidate cytidiltransferase; Protein involved in nucleobase, nucleoside and nucleotide interconversion
      
 0.605
ydhL
annotation not available
      
 0.605
yfjI
Uncharacterized protein YfjI; Phage or Prophage Related
      
 0.605
nrfE
May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase
      
 0.603
ydbD
To E.coli YkiA
      
 0.602
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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