STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykgMannotation not available (87 aa)    
Predicted Functional Partners:
ykgO
annotation not available
 
 
 0.999
rpmB
50S ribosomal protein L28; Protein involved in structural constituent of ribosome and translation
 
 
 0.997
rpmI
Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.993
rpsN
Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
 
 
 
 0.992
rpsP
In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity
  
 
 0.991
rpsR
Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
  
 
 0.991
rpsT
Binds directly to 16S ribosomal RNA
  
 
 0.990
rpmA
50S ribosomal protein L27; Protein involved in structural constituent of ribosome and translation
  
 
 0.989
rplU
This protein binds to 23S rRNA in the presence of protein L20
  
 
 0.989
rplQ
Requires L15 for assembly into the 50S subunit.
  
 
 0.989
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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