STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahBUncharacterized HTH-type transcriptional regulator YahB; Putative transcriptional regulator LYSR-type; Protein involved in transcription activator activity, transcription repressor activity and transcription (310 aa)    
Predicted Functional Partners:
yahF
Uncharacterized protein YahF; Putative oxidoreductase subunit; To E.coli FdrA and some, to bacterial SucD
 
    0.774
yahD
Putative ankyrin repeat protein YahD; Putative transcription factor
 
     0.764
yahE
annotation not available
 
     0.754
yahG
annotation not available
 
     0.751
yahJ
Uncharacterized protein YahJ; Putative deaminase; Protein involved in amine catabolic process
  
     0.607
yahC
annotation not available
       0.589
xapR
HTH-type transcriptional regulator XapR; Positive regulator required for the expression of xapA and xapB. Binds to the inducer xanthosine
  
     0.406
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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