STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahDAnkyrin repeat-containing protein yahd; Putative ankyrin repeat protein YahD; Putative transcription factor (201 aa)    
Predicted Functional Partners:
yahG
annotation not available
 
   
 0.973
yahJ
Uncharacterized protein YahJ; Putative deaminase; Protein involved in amine catabolic process
 
 
 
 0.957
yahF
Putative nad(p)-binding succinyl-coa synthase; To E.coli FdrA and some, to bacterial SucD
 
    0.911
yahE
annotation not available
 
    0.904
yahB
Uncharacterized HTH-type transcriptional regulator YahB; Putative transcriptional regulator LYSR-type; Protein involved in transcription activator activity, transcription repressor activity and transcription
 
     0.764
ybaK
Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro) via a Cys-tRNA(Pro) deacylase activity. May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Is also able to deacylate Cys-tRNA(Cys), and displays weak deacylase activity in vitro against Gly-tRNA(Gly), as well as, at higher concentrations, some other correctly charged tRNAs. Unlike some of its orthologs it is not able to remove the amino acid moiety from incorrectly charged Ala- tRNA(Pro)
      
 0.641
ybgJ
5-oxoprolinase (ATP-hydrolysing) subunit B; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate
      
 0.609
ybhR
ABC-2 type transport system permease protein; Part of the ABC transporter complex YbhFSR that could be involved in efflux of cefoperazone. Probably involved in the translocation of the substrate across the membrane
      
 0.609
ybhN
annotation not available
      
 0.606
yqcA
Short-chain flavodoxin, fmn-binding; Probable electron transporter
      
 0.606
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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