Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
abgB | yahE | b1337 | b0319 | P-aminobenzoyl-glutamate hydrolase, B subunit; Component of the p-aminobenzoyl-glutamate hydrolase multicomponent enzyme system which catalyzes the cleavage of p- aminobenzoyl-glutamate (PABA-GLU) to form p-aminobenzoate (PABA) and glutamate. AbgAB does not degrade dipeptides and the physiological role of abgABT should be clarified. | DUF2877 family protein. | 0.804 |
betT | yahE | b0314 | b0319 | Choline transporter of high affinity; High-affinity uptake of choline driven by a proton-motive force; Belongs to the BCCT transporter (TC 2.A.15) family. | DUF2877 family protein. | 0.480 |
yahA | yahE | b0315 | b0319 | c-di-GMP-specific phosphodiesterase; Acts both as an enzyme and as a c-di-GMP sensor to couple transcriptional activity to the c-di-GMP status of the cell. Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG. Also acts as a transcription factor to control its own expression. | DUF2877 family protein. | 0.523 |
yahC | yahD | b0317 | b0318 | Putative inner membrane protein. | Ankyrin repeat protein; Putative transcription factor. | 0.512 |
yahC | yahE | b0317 | b0319 | Putative inner membrane protein. | DUF2877 family protein. | 0.534 |
yahC | yahF | b0317 | b0320 | Putative inner membrane protein. | Putative NAD(P)-binding succinyl-CoA synthase; Putative oxidoreductase subunit; To E.coli FdrA and some, to bacterial SucD. | 0.401 |
yahC | yahG | b0317 | b0321 | Putative inner membrane protein. | DUF1116 family protein. | 0.402 |
yahD | yahC | b0318 | b0317 | Ankyrin repeat protein; Putative transcription factor. | Putative inner membrane protein. | 0.512 |
yahD | yahE | b0318 | b0319 | Ankyrin repeat protein; Putative transcription factor. | DUF2877 family protein. | 0.895 |
yahD | yahF | b0318 | b0320 | Ankyrin repeat protein; Putative transcription factor. | Putative NAD(P)-binding succinyl-CoA synthase; Putative oxidoreductase subunit; To E.coli FdrA and some, to bacterial SucD. | 0.829 |
yahD | yahG | b0318 | b0321 | Ankyrin repeat protein; Putative transcription factor. | DUF1116 family protein. | 0.914 |
yahE | abgB | b0319 | b1337 | DUF2877 family protein. | P-aminobenzoyl-glutamate hydrolase, B subunit; Component of the p-aminobenzoyl-glutamate hydrolase multicomponent enzyme system which catalyzes the cleavage of p- aminobenzoyl-glutamate (PABA-GLU) to form p-aminobenzoate (PABA) and glutamate. AbgAB does not degrade dipeptides and the physiological role of abgABT should be clarified. | 0.804 |
yahE | betT | b0319 | b0314 | DUF2877 family protein. | Choline transporter of high affinity; High-affinity uptake of choline driven by a proton-motive force; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.480 |
yahE | yahA | b0319 | b0315 | DUF2877 family protein. | c-di-GMP-specific phosphodiesterase; Acts both as an enzyme and as a c-di-GMP sensor to couple transcriptional activity to the c-di-GMP status of the cell. Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG. Also acts as a transcription factor to control its own expression. | 0.523 |
yahE | yahC | b0319 | b0317 | DUF2877 family protein. | Putative inner membrane protein. | 0.534 |
yahE | yahD | b0319 | b0318 | DUF2877 family protein. | Ankyrin repeat protein; Putative transcription factor. | 0.895 |
yahE | yahF | b0319 | b0320 | DUF2877 family protein. | Putative NAD(P)-binding succinyl-CoA synthase; Putative oxidoreductase subunit; To E.coli FdrA and some, to bacterial SucD. | 0.951 |
yahE | yahG | b0319 | b0321 | DUF2877 family protein. | DUF1116 family protein. | 0.882 |
yahE | yahL | b0319 | b0326 | DUF2877 family protein. | Uncharacterized protein. | 0.880 |
yahE | ypjK | b0319 | b2635 | DUF2877 family protein. | CP4-57 prophage; putative inner membrane protein; To E.coli YkfL. | 0.531 |
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