Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
codB | yahJ | b0336 | b0324 | Cytosine transporter; Required for cytosine transport into the cell; Belongs to the purine-cytosine permease (2.A.39) family. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.674 |
rof | yahD | b0189 | b0318 | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | Ankyrin repeat protein; Putative transcription factor. | 0.534 |
rof | yahG | b0189 | b0321 | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | DUF1116 family protein. | 0.528 |
rof | yahJ | b0189 | b0324 | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.711 |
ssnA | yahJ | b2879 | b0324 | Putative chlorohydrolase/aminohydrolase; Protein involved in cell cycle. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.813 |
yahD | rof | b0318 | b0189 | Ankyrin repeat protein; Putative transcription factor. | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | 0.534 |
yahD | yahG | b0318 | b0321 | Ankyrin repeat protein; Putative transcription factor. | DUF1116 family protein. | 0.914 |
yahD | yahJ | b0318 | b0324 | Ankyrin repeat protein; Putative transcription factor. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.916 |
yahG | rof | b0321 | b0189 | DUF1116 family protein. | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | 0.528 |
yahG | yahD | b0321 | b0318 | DUF1116 family protein. | Ankyrin repeat protein; Putative transcription factor. | 0.914 |
yahG | yahI | b0321 | b0323 | DUF1116 family protein. | Carbamate kinase-like protein; Putative kinase; Protein involved in arginine biosynthetic process and pyrimidine nucleotide biosynthetic process; Belongs to the carbamate kinase family. | 0.916 |
yahG | yahJ | b0321 | b0324 | DUF1116 family protein. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.844 |
yahI | yahG | b0323 | b0321 | Carbamate kinase-like protein; Putative kinase; Protein involved in arginine biosynthetic process and pyrimidine nucleotide biosynthetic process; Belongs to the carbamate kinase family. | DUF1116 family protein. | 0.916 |
yahI | yahJ | b0323 | b0324 | Carbamate kinase-like protein; Putative kinase; Protein involved in arginine biosynthetic process and pyrimidine nucleotide biosynthetic process; Belongs to the carbamate kinase family. | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | 0.798 |
yahJ | codB | b0324 | b0336 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | Cytosine transporter; Required for cytosine transport into the cell; Belongs to the purine-cytosine permease (2.A.39) family. | 0.674 |
yahJ | rof | b0324 | b0189 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | Modulator of Rho-dependent transcription termination; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. | 0.711 |
yahJ | ssnA | b0324 | b2879 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | Putative chlorohydrolase/aminohydrolase; Protein involved in cell cycle. | 0.813 |
yahJ | yahD | b0324 | b0318 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | Ankyrin repeat protein; Putative transcription factor. | 0.916 |
yahJ | yahG | b0324 | b0321 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | DUF1116 family protein. | 0.844 |
yahJ | yahI | b0324 | b0323 | Putative metallo-dependent hydrolase domain deaminase; Putative deaminase; Protein involved in amine catabolic process. | Carbamate kinase-like protein; Putative kinase; Protein involved in arginine biosynthetic process and pyrimidine nucleotide biosynthetic process; Belongs to the carbamate kinase family. | 0.798 |
page 1 of 2