Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arnE | yaiL | b4544 | b0354 | Undecaprenyl phosphate-alpha-L-ara4N exporter; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane. | DUF2058 family protein. | 0.466 |
arnE | ybbP | b4544 | b0496 | Undecaprenyl phosphate-alpha-L-ara4N exporter; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane. | Putative ABC transporter permease; Putative oxidoreductase. | 0.555 |
cycA | yaiL | b4208 | b0354 | D-alanine/D-serine/glycine transporter; Permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family. | DUF2058 family protein. | 0.504 |
hflD | yaiL | b1132 | b0354 | Putative lysogenization regulator; Negative regulator of phage lambda lysogenization. Contributes to the degradation of the phage regulatory protein CII. Acts probably by holding CII on the membrane surface, away from the target promoters, but close to the FtsH protease. Belongs to the HflD family. | DUF2058 family protein. | 0.444 |
mhpT | yaiL | b0353 | b0354 | 3-hydroxyphenylpropionic transporter; Uptake of 3-(3-hydroxyphenyl)propionate (3HPP) across the cytoplasmic membrane. Transport is driven by the proton motive force. Does not transport benzoate, 3-hydroxybenzoate or gentisate. Belongs to the major facilitator superfamily. Aromatic acid:H(+) symporter (AAHS) (TC 2.A.1.15) family. | DUF2058 family protein. | 0.904 |
yahA | yaiL | b0315 | b0354 | c-di-GMP-specific phosphodiesterase; Acts both as an enzyme and as a c-di-GMP sensor to couple transcriptional activity to the c-di-GMP status of the cell. Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG. Also acts as a transcription factor to control its own expression. | DUF2058 family protein. | 0.754 |
yahA | yeaJ | b0315 | b1786 | c-di-GMP-specific phosphodiesterase; Acts both as an enzyme and as a c-di-GMP sensor to couple transcriptional activity to the c-di-GMP status of the cell. Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG. Also acts as a transcription factor to control its own expression. | Putative diguanylate cyclase; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules. | 0.953 |
yaiI | yaiL | b0387 | b0354 | UPF0178 family protein. | DUF2058 family protein. | 0.516 |
yaiL | arnE | b0354 | b4544 | DUF2058 family protein. | Undecaprenyl phosphate-alpha-L-ara4N exporter; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane. | 0.466 |
yaiL | cycA | b0354 | b4208 | DUF2058 family protein. | D-alanine/D-serine/glycine transporter; Permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family. | 0.504 |
yaiL | hflD | b0354 | b1132 | DUF2058 family protein. | Putative lysogenization regulator; Negative regulator of phage lambda lysogenization. Contributes to the degradation of the phage regulatory protein CII. Acts probably by holding CII on the membrane surface, away from the target promoters, but close to the FtsH protease. Belongs to the HflD family. | 0.444 |
yaiL | mhpT | b0354 | b0353 | DUF2058 family protein. | 3-hydroxyphenylpropionic transporter; Uptake of 3-(3-hydroxyphenyl)propionate (3HPP) across the cytoplasmic membrane. Transport is driven by the proton motive force. Does not transport benzoate, 3-hydroxybenzoate or gentisate. Belongs to the major facilitator superfamily. Aromatic acid:H(+) symporter (AAHS) (TC 2.A.1.15) family. | 0.904 |
yaiL | yahA | b0354 | b0315 | DUF2058 family protein. | c-di-GMP-specific phosphodiesterase; Acts both as an enzyme and as a c-di-GMP sensor to couple transcriptional activity to the c-di-GMP status of the cell. Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG. Also acts as a transcription factor to control its own expression. | 0.754 |
yaiL | yaiI | b0354 | b0387 | DUF2058 family protein. | UPF0178 family protein. | 0.516 |
yaiL | yajD | b0354 | b0410 | DUF2058 family protein. | HNH nuclease family protein; Belongs to the HNH nuclease family. | 0.549 |
yaiL | ybbP | b0354 | b0496 | DUF2058 family protein. | Putative ABC transporter permease; Putative oxidoreductase. | 0.735 |
yaiL | yeaJ | b0354 | b1786 | DUF2058 family protein. | Putative diguanylate cyclase; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules. | 0.524 |
yaiL | ygiB | b0354 | b3037 | DUF2058 family protein. | DUF1190 family protein; Belongs to the UPF0441 family. | 0.468 |
yajD | yaiL | b0410 | b0354 | HNH nuclease family protein; Belongs to the HNH nuclease family. | DUF2058 family protein. | 0.549 |
ybbP | arnE | b0496 | b4544 | Putative ABC transporter permease; Putative oxidoreductase. | Undecaprenyl phosphate-alpha-L-ara4N exporter; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane. | 0.555 |
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