STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaiOOuter membrane protein. (257 aa)    
Predicted Functional Partners:
yliI
Soluble aldose sugar dehydrogenase; Aldose sugar dehydrogenase with broad substrate specificity. The physiological substrate is unknown. Can oxidize glucose to gluconolactone. Can also utilize D-arabinose, L-arabinose and 2-deoxy- glucose. Has higher activity towards oligomeric sugars, such as maltose, maltotriose or cellobiose. It may function to input sugar- derived electrons into the respiratory network.
      
 0.742
yfaZ
Outer membrane protein, putative porin.
      
 0.643
tamA
Translocation and assembly module for autotransporter export, outer membrane subunit; Part of the translocation and assembly module (TAM) autotransporter assembly complex, which functions in translocation of autotransporters across the outer membrane. Allows substrate (Ag43, AC P39180) to initiate penetration into the outer membrane; TamB is not necessary but may regulate this activity. Has anion selective channel- forming ability, but the physiological relevance of this activity is unclear ; Belongs to the TamA family.
      
 0.624
yqeG
Putative transporter protein.
      
 0.623
frmR
Regulator protein that represses frmRAB operon; Repressor of the frmRAB operon.
     
 0.586
yobD
UPF0266 family inner membrane protein.
      
 0.528
yjfZ
Uncharacterized protein.
      
 0.476
yhjY
Autotransporter beta-domain protein; Putative lipase; Protein involved in fatty acid oxidation.
   
  
 0.463
ydbH
Putative membrane-anchored protein, function unknown.
      
 0.454
yffB
Putative ArsC family reductase; Belongs to the ArsC family.
      
 0.454
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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