Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroL | proC | b0388 | b0386 | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | Pyrroline-5-carboxylate reductase, NAD(P)-binding; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. Does not catalyze the reverse reaction. | 0.465 |
aroL | yaiI | b0388 | b0387 | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | UPF0178 family protein. | 0.453 |
citC | yaiI | b0618 | b0387 | Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase. | UPF0178 family protein. | 0.499 |
minC | yaiI | b1176 | b0387 | Inhibitor of FtsZ ring polymerization; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization. Belongs to the MinC family. | UPF0178 family protein. | 0.542 |
minC | yjjW | b1176 | b4379 | Inhibitor of FtsZ ring polymerization; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization. Belongs to the MinC family. | Putative activating enzyme; Protein involved in anaerobic respiration and protein modification process; Belongs to the organic radical-activating enzymes family. | 0.544 |
proC | aroL | b0386 | b0388 | Pyrroline-5-carboxylate reductase, NAD(P)-binding; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. Does not catalyze the reverse reaction. | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | 0.465 |
proC | yaiI | b0386 | b0387 | Pyrroline-5-carboxylate reductase, NAD(P)-binding; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. Does not catalyze the reverse reaction. | UPF0178 family protein. | 0.563 |
rarD | yaiI | b3819 | b0387 | Putative chloramphenical resistance permease; Protein involved in response to drug and chloramphenicol transport. | UPF0178 family protein. | 0.734 |
rarD | yeiH | b3819 | b2158 | Putative chloramphenical resistance permease; Protein involved in response to drug and chloramphenicol transport. | UPF0324 family inner membrane protein. | 0.731 |
rarD | yfcA | b3819 | b2327 | Putative chloramphenical resistance permease; Protein involved in response to drug and chloramphenicol transport. | TauE/TSUP family inner membrane protein; Putative structural protein. | 0.443 |
yaiI | aroL | b0387 | b0388 | UPF0178 family protein. | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | 0.453 |
yaiI | citC | b0387 | b0618 | UPF0178 family protein. | Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase. | 0.499 |
yaiI | minC | b0387 | b1176 | UPF0178 family protein. | Inhibitor of FtsZ ring polymerization; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization. Belongs to the MinC family. | 0.542 |
yaiI | proC | b0387 | b0386 | UPF0178 family protein. | Pyrroline-5-carboxylate reductase, NAD(P)-binding; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. Does not catalyze the reverse reaction. | 0.563 |
yaiI | rarD | b0387 | b3819 | UPF0178 family protein. | Putative chloramphenical resistance permease; Protein involved in response to drug and chloramphenicol transport. | 0.734 |
yaiI | yaiL | b0387 | b0354 | UPF0178 family protein. | DUF2058 family protein. | 0.516 |
yaiI | yajI | b0387 | b0412 | UPF0178 family protein. | Putative lipoprotein. | 0.735 |
yaiI | yeiH | b0387 | b2158 | UPF0178 family protein. | UPF0324 family inner membrane protein. | 0.809 |
yaiI | yfcA | b0387 | b2327 | UPF0178 family protein. | TauE/TSUP family inner membrane protein; Putative structural protein. | 0.508 |
yaiI | yjjW | b0387 | b4379 | UPF0178 family protein. | Putative activating enzyme; Protein involved in anaerobic respiration and protein modification process; Belongs to the organic radical-activating enzymes family. | 0.542 |
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