node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
fadM | ybaV | b0443 | b0442 | Long-chain acyl-CoA thioesterase III; Long-chain acyl-CoA thioesterase with a preference for 3,5- tetradecadienoyl-CoA. Could be involved in beta-oxidation of fatty acids; Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.843 |
gspF | ybaV | b3327 | b0442 | General secretory pathway component, cryptic; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.538 |
gspF | ycaI | b3327 | b0913 | General secretory pathway component, cryptic; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | ComEC family inner membrane protein. | 0.659 |
hofC | ybaV | b0106 | b0442 | Assembly protein in type IV pilin biogenesis, transmembrane protein; Putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.538 |
hofC | ycaI | b0106 | b0913 | Assembly protein in type IV pilin biogenesis, transmembrane protein; Putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake. | ComEC family inner membrane protein. | 0.679 |
lgoD | ybaV | b4358 | b0442 | L-galactonate oxidoreductase; Catalyzes the oxidation of L-galactonate to D-tagaturonate. Required for growth on L-galactonate as the sole carbon source. In vitro, can also use L-gulonate. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.644 |
lgoD | ybcH | b4358 | b0567 | L-galactonate oxidoreductase; Catalyzes the oxidation of L-galactonate to D-tagaturonate. Required for growth on L-galactonate as the sole carbon source. In vitro, can also use L-gulonate. | PRK09936 family protein. | 0.452 |
ppiD | ybaV | b0441 | b0442 | Periplasmic folding chaperone, has an inactive PPIase domain; PPIases accelerate the folding of proteins. Seems to be involved in the folding of outer membrane proteins. Its preference at the P1 position of the peptide substrate is Glu > Leu > Ala > His > Val > Phe > Ile > Gly > Lys > Thr. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.538 |
queF | ybaV | b2794 | b0442 | 7-cyano-7-deazaguanine reductase (NADPH-dependent); Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1), a late step in the queuosine pathway. Is highly specific for its natural substrate preQ0, since it cannot use various aliphatic, aromatic, benzylic and heterocyclic nitriles, such as acetonitrile, benzonitrile, benzylcyanide and 2-cyanopyrrole, although it can reduce the substrate analog 5-cyanopyrrolo[2,3-d]pyrimidin-4-one with lesser efficiency. Belongs to the GTP cyclohydrolase I family. QueF type 2 subfamily. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.522 |
rlmJ | ybaV | b3499 | b0442 | 23S rRNA m(6)A2030 methyltransferase, SAM-dependent; Specifically methylates the adenine in position 2030 of 23S rRNA. Nascent 23S rRNA seems to be the natural substrate. Appears to be not necessary for ribosome assembly. Required for the utilization of extracellular DNA as the sole source of carbon and energy. Belongs to the RlmJ family. | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 0.810 |
ybaV | fadM | b0442 | b0443 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | Long-chain acyl-CoA thioesterase III; Long-chain acyl-CoA thioesterase with a preference for 3,5- tetradecadienoyl-CoA. Could be involved in beta-oxidation of fatty acids; Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. | 0.843 |
ybaV | gspF | b0442 | b3327 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | General secretory pathway component, cryptic; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.538 |
ybaV | hofC | b0442 | b0106 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | Assembly protein in type IV pilin biogenesis, transmembrane protein; Putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake. | 0.538 |
ybaV | lgoD | b0442 | b4358 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | L-galactonate oxidoreductase; Catalyzes the oxidation of L-galactonate to D-tagaturonate. Required for growth on L-galactonate as the sole carbon source. In vitro, can also use L-gulonate. | 0.644 |
ybaV | ppiD | b0442 | b0441 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | Periplasmic folding chaperone, has an inactive PPIase domain; PPIases accelerate the folding of proteins. Seems to be involved in the folding of outer membrane proteins. Its preference at the P1 position of the peptide substrate is Glu > Leu > Ala > His > Val > Phe > Ile > Gly > Lys > Thr. | 0.538 |
ybaV | queF | b0442 | b2794 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 7-cyano-7-deazaguanine reductase (NADPH-dependent); Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1), a late step in the queuosine pathway. Is highly specific for its natural substrate preQ0, since it cannot use various aliphatic, aromatic, benzylic and heterocyclic nitriles, such as acetonitrile, benzonitrile, benzylcyanide and 2-cyanopyrrole, although it can reduce the substrate analog 5-cyanopyrrolo[2,3-d]pyrimidin-4-one with lesser efficiency. Belongs to the GTP cyclohydrolase I family. QueF type 2 subfamily. | 0.522 |
ybaV | rlmJ | b0442 | b3499 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | 23S rRNA m(6)A2030 methyltransferase, SAM-dependent; Specifically methylates the adenine in position 2030 of 23S rRNA. Nascent 23S rRNA seems to be the natural substrate. Appears to be not necessary for ribosome assembly. Required for the utilization of extracellular DNA as the sole source of carbon and energy. Belongs to the RlmJ family. | 0.810 |
ybaV | ybcH | b0442 | b0567 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | PRK09936 family protein. | 0.790 |
ybaV | ycaI | b0442 | b0913 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | ComEC family inner membrane protein. | 0.627 |
ybaV | yjjG | b0442 | b4374 | Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein. | dUMP phosphatase; Nucleotidase that shows high phosphatase activity toward non- canonical pyrimidine nucleotides and three canonical nucleoside 5'- monophosphates (UMP, dUMP, and dTMP), and very low activity against TDP, IMP, UDP, GMP, dGMP, AMP, dAMP, and 6-phosphogluconate. Appears to function as a house-cleaning nucleotidase in vivo, since the general nucleotidase activity of YjjG allows it to protect cells against non- canonical pyrimidine derivatives such as 5-fluoro-2'-deoxyuridine, 5- fluorouridine, 5-fluoroorotate, 5-fluorouracil, and 5-aza-2'- deoxycytidine, and prevents the i [...] | 0.738 |