STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcKDLP12 prophage; putative recombinase. (508 aa)    
Predicted Functional Partners:
yagM
CP4-6 prophage; uncharacterized protein.
   
  
 0.793
yibG
Uncharacterized protein YibG; Rhs-family protein.
   
    0.632
intD
DLP12 prophage; Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
  
  
 0.604
ygiZ
Inner membrane protein.
   
  
 0.594
ygiL
Putative fimbrial-like protein.
   
    0.540
ybfC
Uncharacterized protein YbfC; Pseudogene, Rhs family.
   
    0.539
acrS
acrAB operon transcriptional repressor; Potential regulator protein for the acrEF/envCD genes.
   
    0.538
intE
E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
   
  
 0.528
yfbK
Von Willebrand factor domain putative lipoprotein; To Synechocystis PCC 6803 sll0103.
      
 0.508
yihG
Inner membrane protein, inner membrane acyltransferase; Putative endonuclease.
      
 0.507
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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