STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcNDLP12 prophage; DNA base-flipping protein; Uncharacterized protein YbcN; Phage or Prophage Related (151 aa)    
Predicted Functional Partners:
ybaZ
Methylated-dna-protein-cysteine methyltransferase related protein; Involved in DNA damage recognition. Binds DNA containing O(6)-methylguanine and larger O(6)-alkylguanine adducts, and to double- stranded DNA that contains an AP (apurinic/apyrimidinic) site . Binds to the damaged base and flips the base out of the DNA duplex into an extrahelical conformation, which allows processing by repair proteins . Works in partnership with the nucleotide excision repair (NER) pathway to enhance the repair of the O(6)- alkylguanine adducts larger than the methyl adduct Also prevents methyl-directe [...]
      
 0.900
ybcI
annotation not available
      
 0.900
ninE
DLP12 prophage; NinE family prophage protein; Prophage NinE homolog; Similar to phage 82 and lambda proteins
  
    0.859
rusA
DLP12 prophage; crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
  
    0.853
ybcO
DLP12 prophage; putative nuclease YbcO; Based on its fold and a conserved His residue, has been predicted to be a nuclease
       0.845
ylcG
Uncharacterized protein YlcG; Phage or Prophage Related; To equivalent protein in phage 82
       0.845
ylcH
DLP12 prophage; uncharacterized protein YlcH; Uncharacterized protein YlcH; Phage or Prophage Related
       0.845
rzpQ
Qin prophage; duf2514 domain-containing protein rzpq; Uncharacterized protein RzpQ; Completely contained in another CDS
      
 0.758
nohD
Terminase small subunit / prophage dna-packing protein; DNA-packaging protein NU1 homolog; Bacteriophage DNA packaging protein
      
 0.674
essD
DLP12 prophage; putative phage lysis protein; Prophage lysis protein S homolog EssD; Phage or Prophage Related
      
 0.619
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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