STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nohDDNA-packaging protein NU1 homolog; Bacteriophage DNA packaging protein (181 aa)    
Predicted Functional Partners:
yccF
annotation not available
      
 0.785
ynfO
Uncharacterized protein YnfO; Pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
    
 
 0.784
stfR
Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family
 
 
 0.779
yehI
To E.coli molybdate metabolism regulator (MolR).
  
     0.727
yfbM
annotation not available
  
     0.701
yahC
annotation not available
  
     0.696
ybcN
Uncharacterized protein YbcN; Phage or Prophage Related
      
 0.674
yfaL
Probably an autotransporter
  
     0.662
yahE
annotation not available
  
     0.661
hofN
Required for the use of extracellular DNA as a nutrient.
  
     0.659
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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