STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcHPRK09936 family protein. (296 aa)    
Predicted Functional Partners:
nfrA
Bacteriophage N4 receptor, outer membrane subunit; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein.
  
 
 0.927
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor.
  
  
 0.887
ybaV
Putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein.
  
  
 0.790
envY
Porin thermoregulatory transcriptional activator; Influences the temperature-dependent expression of several E.coli envelope proteins, most notably the porins OmpF and OmpC and the lambda receptor, LamB.
     
 0.651
pfo
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
   
   0.625
yaiP
Putative family 2 glycosyltransferase; Polysaccharide metabolism; Protein involved in polysaccharide biosynthetic process; Belongs to the glycosyltransferase 2 family.
     
 0.623
yagH
CP4-6 prophage; Putative beta-xylosidase.
      
 0.621
yhcD
Putative outer membrane fimbrial subunit usher protein; Involved in the export and assembly of a fimbrial subunit across the outer membrane; Belongs to the fimbrial export usher family.
      
 0.621
ybjT
Putative NAD-dependent oxidoreductase.
      
 0.533
yafL
Putative lipoprotein and C40 family peptidase; Putative lipoprotein.
      
 0.529
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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