STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcHannotation not available (296 aa)    
Predicted Functional Partners:
nfrB
Required for bacteriophage N4 adsorption. May be a component of the phage receptor
 
     0.973
nfrA
(Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein.
 
 
   0.967
ybaV
annotation not available
      
 0.872
yaiP
Belongs to the glycosyltransferase 2 family
 
   
 0.828
ydhQ
Uncharacterized protein YdhQ; Possible enzyme
  
   
 0.809
mdtO
Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
  
     0.732
yagH
Putative beta-xylosidase
      
 0.731
cohE
Prophage repressor CohE; Phage or Prophage Related
      
 0.731
yhcD
Involved in the export and assembly of a fimbrial subunit across the outer membrane
      
 0.731
yehA
Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches.
  
     0.708
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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