STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeQTo E.coli YbeT (325 aa)    
Predicted Functional Partners:
ybeT
annotation not available
 
   
0.923
yidH
annotation not available
      
 0.823
ybhJ
Uncharacterized protein YbhJ; Putative enzyme
   
  
 0.789
ydhV
annotation not available
      
 0.787
ybdR
Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase
   
  
 0.734
yaaU
Putative transport protein
      
 0.731
djlB
Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding
 
     0.731
ybeR
To E.coli YbeU
 
     0.729
yeaK
annotation not available
      
 0.671
yddA
Inner membrane ABC transporter ATP-binding protein YddA; Putative transport; Not classified
 
   
 0.654
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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