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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeRDUF1266 domain-containing protein YbeR; To E.coli YbeU (235 aa)    
Predicted Functional Partners:
djlB
Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding
 
    0.967
ypjA
Adhesin-like autotransporter ypja; Uncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system
  
   
 0.833
djlC
Uncharacterized J domain-containing protein DjlC; Factor; Chaperones
  
    0.778
elfG
Putative fimbrial-like adhesin protein; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces
  
     0.764
yehP
annotation not available
  
   
 0.763
ycbU
Putative fimbrial protein ycbu; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces
  
     0.747
ycgV
Putative autotransporter adhesin ycgv; Uncharacterized protein YcgV; Putative adhesion and penetration protein
  
     0.739
yraK
Putative fimbrial-like adhesin protein; Part of the yraHIJK fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim operon
  
     0.734
ybeQ
Sel1 family TPR-like repeat protein; To E.coli YbeT
 
     0.729
ycbV
Putative fimbrial-like adhesin protein; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces
  
     0.714
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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