STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybfPUncharacterized lipoprotein YbfP; Putative pectinase (164 aa)    
Predicted Functional Partners:
ytcA
annotation not available
      
 0.820
ysaB
annotation not available
      
 0.784
yiaM
2,3-diketo-L-gulonate TRAP transporter small permease protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system YiaMNO involved in the uptake of 2,3-diketo-L- gulonate
      
 0.731
ykfB
Uncharacterized protein YkfB; Phage or Prophage Related; To E.coli YfjT
      
 0.730
pqiC
Intermembrane transport lipoprotein pqic; Component of a transport pathway that contributes to membrane integrity
      
 0.697
yghG
Lipoprotein yghg; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane. In a functional T2SS this subunit helps assemble the outer membrane channel
      
 0.672
yqhH
annotation not available
      
 0.671
ydaT
Rac prophage; protein ydat; Uncharacterized protein YdaT; Phage or Prophage Related
      
 0.640
mdtP
Putative multidrug efflux pump outer membrane channel; Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
      
 0.619
yegJ
annotation not available
      
 0.607
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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