STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhsCRhs protein with putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell (1397 aa)    
Predicted Functional Partners:
ybfB
annotation not available
       0.845
fimD
Fimbrial usher outer membrane porin protein; Involved in the export and assembly of FimA fimbrial subunits across the outer membrane
      
 0.825
insL1
IS186/IS421 transposase; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
     0.738
b0582
IS186 transposase; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
     0.738
b2394
annotation not available
  
     0.738
hybD
Putative hydrogenase 2 maturation protease; Protease involved in the C-terminal processing of HybC, the large subunit of hydrogenase 2. Specifically cleaves off a 15 amino acid peptide from the C-terminus of the precursor of HybC
      
 0.731
ypjA
Adhesin-like autotransporter ypja; Uncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system
  
     0.712
yibA
annotation not available
 
     0.695
sfmH
Putative fimbrial adhesin protein sfmh; Part of the sfmACDHF fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes
  
     0.687
frvR
Putative transcriptional regulator frvr; Could be involved in the regulation of the transcription of the FRV operon
  
     0.671
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.