STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dtpDDipeptide permease D; Probable proton-dependent permease that transports dipeptides (493 aa)    
Predicted Functional Partners:
yhhH
annotation not available
      
 0.809
mdtG
Multidrug resistance protein MdtG; Confers resistance to fosfomycin and deoxycholate
 
 
 
 0.617
ybgI
GTP cyclohydrolase 1 type 2 homolog; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides
       0.437
yciM
Lipopolysaccharide assembly protein B; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
      
 0.430
ybgL
UPF0271 protein YbgL; Putative lactam utilization protein; Protein involved in carbohydrate catabolic process and response to drug; Belongs to the UPF0271 (lamB) family
     
 0.409
ybgJ
Uncharacterized protein YbgJ; Putative carboxylase; To H.influenzae HI_1731
       0.406
ybgK
Uncharacterized protein YbgK; Putative carboxylase; To H.influenzae HI_1730
       0.406
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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