STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgPUncharacterized fimbrial chaperone YbgP; Could be required for the biogenesis of the putative YbgD fimbria (242 aa)    
Predicted Functional Partners:
ybgQ
Uncharacterized outer membrane usher protein YbgQ; Could be involved in the export and assembly of the putative YbgD fimbrial subunit across the outer membrane
  
 0.968
ybgO
Uncharacterized protein YbgO; May be involved in a fimbrial system chaperoned by YbgP and exported by YbgQ
 
     0.926
ybgD
Putative fimbrial-like protein; Belongs to the fimbrial protein family
 
     0.914
elfC
Probable outer membrane usher protein ElfC; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be involved in the export and assembly of the ElfA fimbrial subunits across the outer membrane
 
     0.781
yraJ
Outer membrane usher protein YraJ; Part of the yraHIJK fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim operon. Probably involved in the export and assembly of fimbrial subunits across the outer membrane
 
     0.777
sfmD
Outer membrane usher protein SfmD; Part of the sfmACDHF fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes. Probably involved in the export and assembly of fimbrial subunits across the outer membrane
 
     0.774
sfmA
Uncharacterized fimbrial-like protein SfmA; Part of the sfmACDHF fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes
     0.765
htrE
Outer membrane usher protein HtrE; Part of the yadCKLM-htrE-yadVN fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Probably involved in the export and assembly of fimbrial subunits across the outer membrane
 
     0.764
yhcD
Uncharacterized outer membrane usher protein YhcD; Involved in the export and assembly of a fimbrial subunit across the outer membrane
  
     0.748
fimD
Outer membrane usher protein FimD; Involved in the export and assembly of FimA fimbrial subunits across the outer membrane
 
     0.727
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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