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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhIPutative dass family tricarboxylate or dicarboxylate transporter; Putative membrane pump protein (477 aa)    
Predicted Functional Partners:
kgtP
Mfs transporter, mhs family, alpha-ketoglutarate permease; Uptake of alpha-ketoglutarate across the boundary membrane with the concomitant import of a cation (symport system)
      
 0.817
ybhH
Putative isomerase YbhH; Putative enzyme; Not classified; Belongs to the PrpF family
 
     0.711
ybhJ
Aconitase family protein; Uncharacterized protein YbhJ; Putative enzyme
 
    0.558
ybhD
Putative dna-binding transcriptional regulator ybhd; Belongs to the LysR transcriptional regulatory family
 
     0.496
citF
Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase
 
   0.409
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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