STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiJannotation not available (86 aa)    
Predicted Functional Partners:
yhaK
Bicupin-related protein; Does not have quercetin 2,3-dioxygenase activity
  
   
 0.913
yjfY
annotation not available
  
   
 0.904
yqjF
annotation not available
  
   
 0.890
yhhW
Quercetinase activity in vitro; Has quercetin 2,3-dioxygenase activity in vitro. Its physiological role is unknown; however, may provide a mechanism that would avoid inhibition of key cellular proteins, such as DNA gyrase, by quercetin
      
 0.876
ydgH
DUF1471 domain-containing protein YdgH; To E.coli YjfY
  
   
 0.861
rclB
Reactive chlorine species (rcs) stress resistance periplasmic protein; Probably involved in reactive chlorine species (RCS) stress resistance
   
  
 0.840
yjfN
annotation not available
  
   
 0.820
yhaJ
Lysr family putative transcriptional regulator; Positive regulator, may be partially responsible for expression of neighboring gene dlsT (yhaO) (By similarity)
  
   
 0.794
yejG
annotation not available
  
    0.772
yebY
annotation not available
  
     0.758
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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