STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiIDksA-type zinc finger protein. (88 aa)    
Predicted Functional Partners:
ybiX
Fe(II)-dependent oxygenase superfamily protein; Putative enzyme.
  
  
 0.862
ygjR
Putative NAD(P)-dependent dehydrogenase; Belongs to the Gfo/Idh/MocA family.
   
  
 0.751
fiu
Catecholate siderophore receptor; Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB. Can also transport catechol-substituted cephalosporins. Receptor for microcins M, H47 and E492.
  
  
 0.747
ycgB
SpoVR family stationary phase protein; To B.subtilis SpoVR.
   
  
 0.599
sufA
Fe-S cluster assembly protein.
   
    0.579
rssA
Putative patatin-like family phospholipase; Belongs to the NTE family.
     
 0.530
bsmA
Bioflm peroxide resistance protein; Involved in protection of biofilms against oxidative stress. Belongs to the BhsA/McbA family.
   
  
 0.520
uxaB
Altronate oxidoreductase, NAD-dependent; Altronate oxidoreductase; Protein involved in carbohydrate catabolic process.
      
 0.490
ybiJ
DUF1471 family putative periplasmic protein.
  
    0.482
yeiR
Zn-stimulated GTPase involved in zinc homeostasis; Involved in metal homeostasis. Has GTPase activity. Binds several Zn(2+) ions in vitro.
  
  
 0.451
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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